BeRT - Extract Comparison
Target release | 2.3 |
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Epic | |
Document status | DRAFT |
Document owner | @Deb Weigand |
Designer | @Yaw Nti-Addae |
Tech lead |
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Developer | @Luke Cook |
QA | @Deb Weigand |
Objective
Compare the extract files generated from a BeRT test scenario to a known good extract provided by QA
Requirements - what to compare in each of the files (y = compare, n= do not compare)
Dataset.genotype | Dataset.hmp.txt | marker.file | sample.file | summary.file | project.file | |||
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| marker_name platform_name variant_id variant_code marker_ref marker_alts marker_sequence marker_strand marker_primer_forw1 marker_primer_forw2 marker_primer_rev1 marker_primer_rev2 marker_probe1 marker_probe2 marker_polymorphism_type marker_synonym marker_source marker_gene_id marker_gene_annotation marker_polymorphism_annotation marker_marker_dom marker_clone_id_pos marker_genome_build marker_typeofrefallele_alleleorder marker_strand_data_read marker_id marker_clone_id marker_allele2 marker_allele3 | y y n n y y y y y y y y y y y y y y y y y y y y y n y y y | dnarun_name germplasm_name germplasm_pedigree germplasm_type dnarun_barcode project_name project_pi_contact project_genotyping_purpose project_date_sampled project_division project_study_name experiment_name vendor_protocol_name vendor_name protocol_name dataset_name germplasm_external_code germplasm_species germplasm_id germplasm_seed_source_id germplasm_subsp germplasm_heterotic_group germplasm_par1 germplasm_par1_type germplasm_par2 germplasm_par2_type germplasm_par3 germplasm_par3_type germplasm_par4 germplasm_par4_type dnasample_name dnasample_platename dnasample_num dnasample_well_row dnasample_well_col dnasample_trial_name dnasample_sample_group dnasample_sample_group_cycle dnasample_sample_type dnasample_sample_parent dnasample_ref_sample dnasample_uuid gdm_germplasm_id dnasample_id dnarun_id | y y y y y y y y y y y y y y y y y y y y y y y y y y y y y y y y y y y y y y y y y n n n n | do NOT compare | do NOT compare |
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Open Questions
Question | Answer | Date Answered |
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