Extract by Dataset

Owned by Yaw Nti-Addae
Last updated: May 07, 2021 by Joel ByrnesVersion comment
  • Upon login or selection of the dataset tab, the user is presented with filters and a grid with columns which can be sorted in asc or desc order
  • Name
  • Name (dataset name)
  • Project
  • Experiment
  • PI
  • Loaded (modified date)

Datasets:

  • The grid initially displays all datasets that have a matrix loaded to the system fo all PIs, all Projects, and all Experiments - initial sort is desc - most recent first
  • by unchecking 'Extract-Ready', all datasets are listed which includes datasets defined in the LoaderUI and not yet loaded, as well as datasets which have been loaded.
  • Filters may be used in a hierarchical manner to filter information in the grid
  • Upon selection of a Principle Investigator, all Datasets for all Projects and all Experiments are listed for that PI
  • Upon selection of a Principle Investigator and Project, all Datasets in all Experiments are listed for the selected Project and selected PI
  • Upon selection of a Principle Investigator, Project, and Experiment, all Datasets are listed for the selected Experiment, selected Project and selected PI
  • Details box: on click of the icon to the left of a dataset, detailed information of the dataset will be displayed as shown below:


  • A dataset can be added to the extraction criteria by checking the box to the left of the details icon for a given dataset
  • Only datasets that have been loaded and are ready for extract have a checkbox next to them
  • Multiple datasets can be checked and added to the extraction criteria
  • A dataset can be removed from the extraction criteria by unchecking the box

Select Format:

  • Select Format by checking one of the radio buttons Hapmap, Flapjack, or Metdata as the genotype matrix output format
  • From the drop down menu, select 'No Mapset' or one map name

When all required selections are made, the Submit button will be green

Upon Submission of an Extract:

  • A pop-up appears with status of the submission: either successful or an informative error message
  • The pop-up can be closed by clicking the 'x' in its upper right corner
  • The Extraction Criteria pane will be cleared
  • The Submit button is back to red
  • The user will not be able to submit a new extraction job unless and until, required criteria have been selected
  • When extraction is complete, the user will receive an email notification from GOBii indicating whether the extract was a 'SUCCESS' or 'FAIL'
    • If a SUCCESS, the email will contain various details as shown below:

    • If a FAIL, the email will contain various details as shown below: