Extract by Samples

• Upon selection of By Samples tab, the user is presented with filters and other selection criteria, with the Submit button set to red

Filters:

• Used in a hierarchical manner to filter information
• Selecting a Principle Investigator and/or Project are not required
• The defaut is All Principle Investigators and All Projects
• Upon selection of a Principle Investigator, all Projects are available in the Projects drop-down for the selected PI
• Dataset Type is required
• Platform is required - multiple Platforms may be selected

Included Samples:

• List Item Types is required - Germplasm is the default
• File or list must be selected
  • When selecting the File radio button, <Choose File> and <Upload> to add the file to the Extraction Criteria
  • When selecting the List radio button, enter a list of items, one per line (200 maximum), and <Add to Extract>

Select Format:

• By checking one of the radio buttons Hapmap, Flapjack, or Metdata as the genotype matrix output format
• From the drop-down menu, select 'No Mapset' or one map name

When all required selections are made, the Submit button will be green

Upon Submission of an Extract:

• A pop-up appears with status of the submission - either successful or an informative error message
• The pop-up can be closed by clicking the 'x' in its upper right corner
• The Extraction Criteria pane will be cleared
• The Submit button is back to red
• The user will not be able to submit a new extraction job unless and until, required criteria have been selected
• When extraction is complete, the user will receive an email notification from GOBii indicating whether the extract was a 'SUCCESS' or 'FAIL'