Extract by Samples

Owned by Yaw Nti-Addae
Last updated: Mar 24, 2020 by Monica Franciscus (Unlicensed)
2 min read
  • Upon selection of By Samples tab, the user is presented with filters and other selection criteria, with the Submit button set to red

Filters:

  • Used in a hierarchical manner to filter information
  • Selecting a Principle Investigator and/or Project are not required
  • The defaut is All Principle Investigators and All Projects
  • Upon selection of a Principle Investigator, all Projects are available in the Projects drop-down for the selected PI
  • Dataset Type is required
  • Platform is required - multiple Platforms may be selected

Included Samples:

  • List Item Types is required - Germplasm is the default
  • File or list must be selected
    • When selecting the File radio button, <Choose File> and <Upload> to add the file to the Extraction Criteria
    • When selecting the List radio button, enter a list of items, one per line (200 maximum), and <Add to Extract>

Select Format:

  • By checking one of the radio buttons Hapmap, Flapjack, or Metdata as the genotype matrix output format
  • From the drop-down menu, select 'No Mapset' or one map name

When all required selections are made, the Submit button will be green

Upon Submission of an Extract:

  • A pop-up appears with status of the submission - either successful or an informative error message
  • The pop-up can be closed by clicking the 'x' in its upper right corner
  • The Extraction Criteria pane will be cleared
  • The Submit button is back to red
  • The user will not be able to submit a new extraction job unless and until, required criteria have been selected
  • When extraction is complete, the user will receive an email notification from GOBii indicating whether the extract was a 'SUCCESS' or 'FAIL'