Standardized Database Alleles

Target release

2.3

Epic

https://gobiiproject.atlassian.net/browse/GDM-771GDM-771

Document status

DRAFT

Document owner

@Joshua Lamos-Sweeney

Designer

@Joshua Lamos-Sweeney

Tech lead

@Joshua Lamos-Sweeney

Technical writers

 

QA

 

Objective

Standardize to upper-case all string typed allele types in the database, for ease of computation.

Success metrics

Goal

Metric

Goal

Metric

Standardize downstream use

 

 

 

Assumptions

Requirements

Requirement

User Story

Importance

Jira Issue

Notes

Requirement

User Story

Importance

Jira Issue

Notes

1

Must deal with Reference and Alternate values

GDM-773

HIGH

 

 

2

 Must deal with all string-for-allele dataset types

GDM-772

 

 

 

3

 

 

 

 

 

User interaction and design

Open Questions

Question

Answer

Date Answered

Question

Answer

Date Answered

If we have an IUPAC storage type, ‘uppercasing’ may be actively wrong.

We don’t have such a type currently.

 

Out of Scope

Standardizing Marker Group allele cases.