Loading Template for Markers

Target release

v3.0

Epic

 

Document status

DRAFT

Document owner

@Yaw Nti-Addae

Designer

@Vishnu Govindaraj

Tech lead

@Vishnu Govindaraj

Technical writers

 

QA

 

Objective

Objective is to be able to load marker information through web services using defined templates

Marker information template

Name

Table

Field

Name

Table

Field

Platform.name

Platform

name

mapset.name

Mapset

name

marker.name

marker

name

marker.ref

ref

marker.alts

alt

marker.sequence

 

marker.strand_name

 

marker.props.{property_name}

props

linkage_group.name

linkage_group

name

linkage_group.start

start

linkage_group.stop

stop

marker_linkage_group.linkage_group_name

marker_linkage_group

linkage_group_id

marker_linkage_group.marker_name

marker_id

marker_linkage_group.start

start

marker_linkage_group.stop

stop

marker_groups.name

marker_groups

name

marker_groups.germplasm_group

marker_groups

germplasm_group

marker_groups.favorable_alleles

marker_groups

fav_alleles

DNA information template

Name

Table

Field

Notes

Name

Table

Field

Notes

germplasm.name

germplasm

name

 

germplasm.external_code

external_code

 

germplasm.species_name

species_name

 

germplasm.type

type

 

germplasm.props{property_name}

props

 

dnasample.name

dnasample

name

 

dnasample.platename

platename

 

dnasample.num

num

 

dnasample.well_col

well_col

 

dnasample.well_row

well_row

 

dnasample.uuid

uuid

 

dnarun.props.{property_name}

props

 

dnarun.name

dnarun

name

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Notes:

  • Dont allow unknown CV terms

  • Will only load data specified in template, any other fields in data will be ignored

  • Should be able to create project and experiments on the fly and load data to them

Data sources:

  • local system through file browse

  • server path to which GDM containers have access

  • URL to download data