2022-02-08 Meeting notes
Date
Feb 8, 2022
Participants
@Evan Rees
@Dave Matthews
@Francisco Agosto
@Mathieu Rouard
@guilhem.sempere
@Moira Sheehan
@Pierre Larmande
@Sebastian Raubach
Goals
Discussion topics
Item | Presenter | Notes |
---|---|---|
PLINK format | @guilhem.sempere |
|
sparse datasets | @guilhem.sempere @Evan Rees | Use maize_chr1 (50%) |
extraction across datasets | @Evan Rees | load all 10 maize chromosomes only need to benchmark chromosome 1
extraction by sample will be across datasets
|
storing outputs | @Evan Rees | Save extracted files to |
completion plan | @Evan Rees | Aim to have all benchmarks filled in by next meeting Mar 8, 2022 |
Action items
@Evan Rees contact Breedbase
@Mathieu Rouard contact PostgreSQL Tripal folks about potential inclusion
@guilhem.sempere provide maize_chr1 as Flapjack and VCF for others to benchmark