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2021-04-29 Meeting notes

2021-04-29 Meeting notes

Owned by Elizabeth Jones
Last updated: Aug 10, 2021 by Evan Rees
1 min read

Benchmarking suggestions

Start with a SNP dataset - vcf ? - check with Sebastian and Breedbase (Titima)

Gigwa - 10s Ms markers x 1000s samples

Loading times?

Extract times - increasing marker and sample numbers?

Start with overview of features so we can understand better benchmarking

 see links to files in main page General Information

Action items April 29

All - check can access site and load database - Gigwa still to be loaded to VM. Guilhem can access site but needs a user name
Yaw - update confluence so all participants can edit
Yaw - set up slack channel
Yaw - Have user accounts been set up? Set up and distribute. Need user names for people setting up databases.
Yaw - request VMs are not open for security
Dave to set up training with Liz to learn how to use GDM
Yaw make sure to invite Moira to next meeting to discuss polyploid data
Yaw invite Breedbase (Titima) to next meeting
Liz put together a table overview of features that we can all align against
Schedule a demo of each system features for a future meeting
Yaw set up monthly meetings