2021-04-29 Meeting notes

Owned by Elizabeth Jones
Last updated: Aug 10, 2021 by Evan Rees
1 min read

Benchmarking suggestions

Start with a SNP dataset - vcf ? - check with Sebastian and Breedbase (Titima)

Gigwa - 10s Ms markers x 1000s samples

Loading times?

Extract times - increasing marker and sample numbers?

Start with overview of features so we can understand better benchmarking

 see links to files in main page General Information

Action items April 29

All - check can access site and load database - Gigwa still to be loaded to VM. Guilhem can access site but needs a user name
Yaw - update confluence so all participants can edit
Yaw - set up slack channel
Yaw - Have user accounts been set up? Set up and distribute. Need user names for people setting up databases.
Yaw - request VMs are not open for security
Dave to set up training with Liz to learn how to use GDM