2019-06-18 EiB Module 5 documentation, dev status, deployment, documentation, repository, API mockserver, documentation
Date
Jun 18, 2019
The GOBii Project
GOBii’s mission is to build open-source genomic data management and analysis tools to enable breeders to implement genomic and marker-assisted selection as part of their routine breeding programs.
The GOBii Genomic Data Management (GOBii-GDM) System is a scalable and responsive genomic data management system, with a BrAPI-enabled web-service layer, integrated genotyping data QC, integrated web-based file management, and a Marker Tools Portal to access all GOBii-GDM tools and key breeding tools developed in Galaxy and Flapjack.
Features
High-scale marker genotyping data management with fast load and extract times
API layer including BrAPI to connect to adjacent systems
Integrated genotyping data QC layer with KDCompute and DArTView to monitor data quality. Developed with Diversity Arrays Technology (DArT), Australia
Integrated web-based file management with OwnCloud
A single place to access GOBii tools with an integrated GOBii Marker Portal
System administration tools to search and delete data in GOBii tool ‘Timescope’
Integrated docker monitoring with Portainer
Genotyping data analysis tools for pedigree verification, marker-assisted breeding and forward breeding in Flapjack. Developed with James Hutton Institute (JHI), UK
Genomic selection analysis pipeline in Galaxy
Tech Specs
https://gobiiproject.atlassian.net/wiki/spaces/GD/pages/31916033