GOBII_ERD

Table analysis

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	analysis_id	serial
	name	text
	description	text
*	type_id	integer
	program	text
	programversion	text
	algorithm	text
	sourcename	text
	sourceversion	text
	sourceuri	text
	reference_id	integer
	parameters	jsonb
	timeexecuted	timestamp
*	status	integer
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
Indexes
	pk_analysis	ON analysis_id
	idx_analysis_type_id	ON type_id
Foreign Keys
	analysis_analysis_type_id_fkey	( type_id ) ref cv (cv_id)

Table contact

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	contact_id	serial
*	lastname	text
*	firstname	text
*	code	text
*	email	text
	roles	integer[]
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
	organization_id	integer
	username	text
Indexes
	pk_contact	ON contact_id
	email_key	ON email
	contact_username_key	ON username
Foreign Keys
	contact_organization_id_fkey	( organization_id ) ref organization (organization_id)

Table cv

\n

A term, class, universal or type within an\nontology or controlled vocabulary. This table is also used for\nrelations and properties. cvterms constitute nodes in the graph\ndefined by the collection of cvterms and cvterm_relationships.

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type	Description
*	cv_id	serial
*	term	text	A concise human-readable name or\nlabel for the cvterm. Uniquely identifies a cvterm within a cv.
*	definition	text	A human-readable text\ndefinition.
*	rank	integer DEFAULT 0
*	cvgroup_id	integer	The cv or ontology or namespace to which\nthis cvterm belongs.
	abbreviation	text
	dbxref_id	integer	Primary identifier dbxref - The\nunique global OBO identifier for this cvterm.
*	status	integer DEFAULT 1
	props	jsonb DEFAULT '{}'::jsonb
Indexes
	pk_cv	ON cv_id
	unique_cvterm_term_cvgroupid	ON term, cvgroup_id
	idx_cv_cvgroupid	ON cvgroup_id
	idx_cv_dbxrefid	ON dbxref_id
	idx_cv_term	ON term
Foreign Keys
	cv_cvgroupid_fkey	( cvgroup_id ) ref cvgroup (cvgroup_id)
	cv_dbxrefid_fkey	( dbxref_id ) ref dbxref (dbxref_id)

Table cvgroup

\n

A controlled vocabulary or ontology. A cv is\ncomposed of cvterms (AKA terms, classes, types, universals - relations\nand properties are also stored in cvterm) and the relationships\nbetween them.

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type	Description
*	cvgroup_id	serial
*	name	text	The name of the group.
	definition	text	A text description of the criteria for membership of this group.
*	type	integer DEFAULT 1	Determines if CV group is of type "System CV" (1) or "Custom CV" (2). More types can be added as needed
	props	jsonb DEFAULT '{}'::jsonb
Indexes
	cv_pkey	ON cvgroup_id
	unique_cvgroup_name_type	ON name, type
	idx_cvgroup	ON type

Table dataset

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	dataset_id	serial
*	experiment_id	integer
*	callinganalysis_id	integer
	analyses	integer[]
	data_table	text
	data_file	text
	quality_table	text
	quality_file	text
	scores	jsonb
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date
	status	integer
	type_id	integer
	name	text
	job_id	integer
Indexes
	pk_dataset	ON dataset_id
	idx_dataset_experiment_id	ON experiment_id
Foreign Keys
	dataset_callinganalysis_id_fkey	( callinganalysis_id ) ref analysis (analysis_id)
	dataset_experiment_id_fkey	( experiment_id ) ref experiment (experiment_id)
	dataset_job_id_fk	( job_id ) ref job (job_id)

Table dbxref

\n

A unique, global, public, stable identifier. Not necessarily an external reference - can reference data items inside the particular instance being used. Typically a row in a table can be uniquely identified with a primary identifier (called dbxref_id); a table may also have secondary identifiers (in a linking table _dbxref). A dbxref is generally written as : or as ::.

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type	Description
*	dbxref_id	serial
*	accession	text DEFAULT ''::text	The local part of the identifier. Guaranteed by the db authority to be unique for that db.
	ver	text
	description	text
	db_name	text	source name, ex. EDAM Ontology\nA database authority. Typical databases in\nbioinformatics are FlyBase, GO, UniProt, NCBI, MGI, etc. The authority\nis generally known by this shortened form, which is unique within the\nbioinformatics and biomedical realm.
	url	text
	props	jsonb DEFAULT '{}'::jsonb
Indexes
	dbxref_pkey	ON dbxref_id
	unique_dbxref_accession_version	ON accession, ver
	idx_dbxref_accession	ON accession
	idx_dbxref_ver	ON ver

Table display

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	display_id	serial
*	table_name	text
	column_name	text
	display_name	text
	created_by	integer
	created_date	date
	modified_by	integer
	modified_date	date
	rank	integer
Indexes
	pk_table_display	ON display_id

Table dnarun

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	dnarun_id	serial
*	experiment_id	integer
*	dnasample_id	integer
	name	text
	code	text
	dataset_dnarun_idx	jsonb DEFAULT '{}'::jsonb
	props	jsonb DEFAULT '{}'::jsonb
Indexes
	pk_dnarun	ON dnarun_id
	idx_dnarun_datasetdnarunidx	ON dataset_dnarun_idx
	idx_dnarun_name	ON name
	idx_dnarun_props	ON props
Foreign Keys
	dnarun_dnasample_id_fkey	( dnasample_id ) ref dnasample (dnasample_id)
	dnarun_experiment_id_fkey	( experiment_id ) ref experiment (experiment_id)

Table dnasample

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	dnasample_id	serial
*	name	text
	code	text
	platename	text
	num	text
	well_row	text
	well_col	text
*	project_id	integer
*	germplasm_id	integer
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
*	status	integer
	props	jsonb DEFAULT '{}'::jsonb
Indexes
	pk_dnasample	ON dnasample_id
	idx_dnasample_name	ON name
	idx_dnasample_num	ON num
	idx_dnasample_platename	ON platename
	idx_dnasample_props	ON props
	idx_dnasample_wellrow_wellcol	ON well_row, well_col
Foreign Keys
	dnasample_germplasm_id_fkey	( germplasm_id ) ref germplasm (germplasm_id)
	dnasample_project_id_fkey	( project_id ) ref project (project_id)

Table edge

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	edge_id	serial
*	start_vertex	integer
*	end_vertex	integer
*	type_id	integer
	criterion	text
Indexes
	edge_pkey	ON edge_id
	edge_start_vertex_end_vertex_key	ON start_vertex, end_vertex
	end_vertex_idx	ON end_vertex
	start_vertex_idx	ON start_vertex
	typeof_edge_idx	ON type_id
Foreign Keys
	edge_type_id_fkey	( type_id ) ref cv (cv_id)
	edge_end_vertex_fkey	( end_vertex ) ref vertex (vertex_id)
	edge_start_vertex_fkey	( start_vertex ) ref vertex (vertex_id)
Constraints
	self_loops_check	start_vertex <> end_vertex

Table experiment

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	experiment_id	serial
*	name	text
*	code	text
*	project_id	integer
	manifest_id	integer
	data_file	text
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
*	status	integer
	vendor_protocol_id	integer
Indexes
	pk_experiment	ON experiment_id
	idx_experiment_name	ON name
	idx_experiment_project_id	ON project_id
	idx_experiment_vendor_protocol_id	ON vendor_protocol_id
Foreign Keys
	experiment_manifest_id_fkey	( manifest_id ) ref manifest (manifest_id)
	experiment_project_id_fkey	( project_id ) ref project (project_id)
	experiment_vendor_protocol_id_fkey	( vendor_protocol_id ) ref vendor_protocol (vendor_protocol_id)

Table germplasm

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	germplasm_id	serial
	name	text
	external_code	text
	species_id	integer
	type_id	integer
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
*	status	integer
	code	text DEFAULT 0
	props	jsonb DEFAULT '{}'::jsonb
Indexes
	pk_germplasm	ON germplasm_id
	idx_germplasm_status	ON status
	idx_germplasm_species_id	ON species_id
	idx_germplasm_external_code	ON external_code
	idx_germplasm_name	ON name
	idx_germplasm_props	ON props
	idx_germplasm_type_id	ON type_id
Foreign Keys
	germplasm_species_id_fkey	( species_id ) ref cv (cv_id)
	germplasm_germplasm_type_id_fkey	( type_id ) ref cv (cv_id)

Table gobiiprop

\n

This table is different from other prop tables/columns in the database, as it is for storing information about the database itself, like schema version

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type	Description
*	gobiiprop_id	serial
*	type_id	integer	The name of the property or slot is a cvterm. The meaning of the property is defined in that cvterm.
	value	text	The value of the property, represented as text. Numeric values are converted to their text representation.
*	rank	integer DEFAULT 0	Property-Value ordering. Any\ncv can have multiple values for any particular property type -\nthese are ordered in a list using rank, counting from zero. For\nproperties that are single-valued rather than multi-valued, the\ndefault 0 value should be used.
Indexes
	gobiiprop_pkey	ON gobiiprop_id
	gobiiprop_c1	ON type_id, rank

Table job

\n

This table keeps track of all the data loading and extraction jobs.

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	job_id	serial
*	type_id	integer
*	payload_type_id	integer
*	status	integer
	message	text
*	submitted_by	integer
*	submitted_date	timestamptz DEFAULT now()
	name	text
Indexes
	pk_job	ON job_id
	idx_job_name	ON name
	idx_job_payload_type_id	ON payload_type_id
	idx_job_status	ON status
	idx_job_submitted_by	ON submitted_by
	idx_job_submitted_date	ON submitted_date
	idx_job_type_id	ON type_id
Foreign Keys
	job_submitted_by_fx	( submitted_by ) ref contact (contact_id)
	job_payload_type_id_fk	( payload_type_id ) ref cv (cv_id)
	job_status_fk	( status ) ref cv (cv_id)
	job_type_id_fk	( type_id ) ref cv (cv_id)

Table linkage_group

\n

This table will contain different linkage groups, ie. Chromosome 1, Chromosome 2, etc. along with their respective start and stop boundaries.

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type	Description
*	linkage_group_id	serial
*	name	varchar	ex. Chromosome 1, Chromosome 2, ..., ChromosomeN, LG01, LG02, etc.
*	start	integer DEFAULT 0	Start of the linkage group. 0-based, interbased coordinates.
*	stop	integer DEFAULT 0	The maximum position in the linkage group, ex. 200, 200000000
*	map_id	integer	Foreign key to the Map table. This defines which map the linkage group belongs to.
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
Indexes
	pk_linkage_group	ON linkage_group_id
	idx_linkage_group_map_id	ON map_id
	idx_linkage_group_name	ON name
Foreign Keys
	linkage_group_map_id_fkey	( map_id ) ref mapset (mapset_id)

Table manifest

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	manifest_id	serial
*	name	text
*	code	text
	file_path	text
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
Indexes
	pk_manifest	ON manifest_id

Table mapset

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	mapset_id	serial
*	name	text
*	code	text
	description	text
	reference_id	integer
*	type_id	integer
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
*	status	integer
	props	jsonb DEFAULT '{}'::jsonb
Indexes
	pk_map	ON mapset_id
	idx_mapset_props	ON props
Foreign Keys
	map_map_type_fkey	( type_id ) ref cv (cv_id)
	map_reference_id_fkey	( reference_id ) ref reference (reference_id)

Table marker

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type	Description
*	marker_id	serial
*	platform_id	integer
	variant_id	integer
*	name	text
	code	text
	ref	text
	alts	_text
	sequence	text
	reference_id	integer
	primers	jsonb
	strand_id	integer
*	status	integer
	probsets	jsonb
	dataset_marker_idx	jsonb DEFAULT '{}'::jsonb
	props	jsonb DEFAULT '{}'::jsonb
	dataset_vendor_protocol	jsonb DEFAULT '{}'::jsonb	Key-value-pair JSONB that stores the vendor_protocol ID for each marker-dataset combination.
Indexes
	pk_marker	ON marker_id
	idx_marker_strand_id	ON strand_id
	idx_marker_reference_id	ON reference_id
	idx_marker_datasetmarkeridx	ON dataset_marker_idx
	idx_marker_datasetvendorprotocol	ON dataset_vendor_protocol
	idx_marker_name	ON name
	idx_marker_props	ON props
Foreign Keys
	marker_strand_id_fkey	( strand_id ) ref cv (cv_id)
	marker_platform_id_fkey	( platform_id ) ref platform (platform_id)
	marker_reference_id_fkey	( reference_id ) ref reference (reference_id)
	marker_variant_id_fkey	( variant_id ) ref variant (variant_id)

Table marker_group

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	marker_group_id	serial
*	name	text
	code	text
*	markers	jsonb
	germplasm_group	text
	created_by	integer
	created_date	date
	modified_by	integer
	modified_date	date
*	status	integer
Indexes
	pk_marker_group	ON marker_group_id
	unq_markergrp_name	ON name

Table marker_linkage_group

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	marker_linkage_group_id	serial
*	marker_id	integer
	start	numeric( 13, 3 )
	stop	numeric( 13, 3 )
*	linkage_group_id	integer
Indexes
	pk_marker_map	ON marker_linkage_group_id
	idx_marker_linkage_group_linkage_group_id	ON linkage_group_id
	idx_marker_linkage_group_marker_id	ON marker_id
	idx_marker_linkage_group_start	ON start
	idx_marker_linkage_group_stop	ON stop
Foreign Keys
	marker_linkage_group_linkage_group_id_fkey	( linkage_group_id ) ref linkage_group (linkage_group_id)
	marker_map_marker_id_fkey	( marker_id ) ref marker (marker_id)

Table organization

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	organization_id	serial
*	name	text
	address	text
	website	text
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
*	status	integer DEFAULT 1
Indexes
	organization_pkey	ON organization_id
	organization_name_key	ON name

Table platform

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	platform_id	serial
*	name	text
*	code	text
	description	text
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
*	status	integer
	type_id	integer
	props	jsonb DEFAULT '{}'::jsonb
Indexes
	pk_platform	ON platform_id
	idx_platform_type_id	ON type_id
	idx_platform_props	ON props
Foreign Keys
	platform_type_id_fkey	( type_id ) ref cv (cv_id)

Table project

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\t\t\t\n\t\t\n\t\t\n\t\n\n\t\n\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	project_id	serial
*	name	text
	code	text
	description	text
*	pi_contact	integer
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
*	status	integer
	props	jsonb DEFAULT '{}'::jsonb
Indexes
	pk_project	ON project_id
	pi_project_name_key	ON pi_contact, name
	idx_project_pi_contact	ON pi_contact
	idx_project_name	ON name
	idx_project_props	ON props
Foreign Keys
	project_pi_contact	( pi_contact ) ref contact (contact_id)

Table protocol

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A Platform can have multiple protocols and more than one protocol can be run by more than one vendor.

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Indexes	Field Name	Data Type
*	protocol_id	serial
*	name	text
	description	text
	type_id	integer
	platform_id	integer
	props	jsonb DEFAULT '{}'::jsonb
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
	status	integer DEFAULT 1
Indexes
	pk_protocol	ON protocol_id
	idx_protocol_platform_id	ON platform_id
	idx_protocol_type_id	ON type_id
Foreign Keys
	protocol_type_id_fkey	( type_id ) ref cv (cv_id)
	protocol_platform_id_fkey	( platform_id ) ref platform (platform_id)

Table reference

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Indexes	Field Name	Data Type
*	reference_id	serial
*	name	text
*	version	text
	link	text
	file_path	text
	created_by	integer
	created_date	date DEFAULT ('now'::text)::date
	modified_by	integer
	modified_date	date DEFAULT ('now'::text)::date
Indexes
	pk_reference	ON reference_id

Table role

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Indexes	Field Name	Data Type
*	role_id	serial
*	role_name	text
*	role_code	text
	read_tables	integer[]
	write_tables	integer[]
Indexes
	pk_role	ON role_id
	idx_role_role_name	ON role_name

Table timescoper

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Indexes	Field Name	Data Type
*	timescoper_id	serial
*	firstname	text
*	lastname	text
*	username	text
*	password	text
	email	text
	role	integer DEFAULT 3
Indexes
	pk_timescoper	ON timescoper_id
	username_key	ON username

Table transitive_closure

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Indexes	Field Name	Data Type	Description
	start_vertex	integer
	end_vertex	integer
	distance	integer
	path_string	text

Table variant

\n\n\n\n\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\t\n\t\t\n\t\t\n\t\t\n\t\t\n\t\n\n\t\t\t\n\t\t\n\t\t\n\t\n\n

Indexes	Field Name	Data Type
*	variant_id	serial
	code	text
	created_by	integer
	created_date	date
	modified_by	integer
	modified_date	date
Indexes
	pk_variant	ON variant_id

Table vendor_protocol

\n

Vendors reside in the Organization table. A vendor can provide multiple protocols, and a particular protocol can be offered by multiple vendors, hence the N:M relationship table.

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Indexes	Field Name	Data Type	Description
*	vendor_protocol_id	serial
	name	text	This is optional.
*	vendor_id	integer
*	protocol_id	integer
	status	integer DEFAULT 1
Indexes
	pk_vendor_protocol	ON vendor_protocol_id
	idx_vendor_protocol_protocol_id	ON protocol_id
	idx_vendor_protocol_vendor_id	ON vendor_id
Foreign Keys
	vendor_protocol_vendor_id_fkey	( vendor_id ) ref organization (organization_id)
	vendor_protocol_protocol_id_fkey	( protocol_id ) ref protocol (protocol_id)

Table vertex

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Indexes	Field Name	Data Type
*	vertex_id	serial
*	name	text
*	type_id	integer
*	table_name	text
*	data_loc	text
	criterion	text
*	alias	text
*	relevance	integer
*	is_entry	bool
Indexes
	vertex_pkey	ON vertex_id
	entry_vertex_idx	ON is_entry
	typeof_vertex_idx	ON type_id
	vertex_name_idx	ON name
Foreign Keys
	vertex_type_id_fkey	( type_id ) ref cv (cv_id)

View v_dataset_summary

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Query
SELECT d.dataset_id,\n d.name AS dataset_name,\n d.experiment_id,\n e.name AS experiment_name,\n d.callinganalysis_id,\n a.name AS callingnalysis_name,\n d.analyses,\n d.data_table,\n d.data_file,\n d.quality_table,\n d.quality_file,\n d.scores,\n c1.username AS created_by_username,\n d.created_date,\n c2.username AS modified_by_username,\n d.modified_date,\n cv1.term AS status_name,\n cv2.term AS type_name,\n j.name AS job_name,\n p.project_id,\n p.name AS project_name,\n pi.contact_id AS pi_id,\n pi.firstname AS pi_firstname,\n pi.lastname AS pi_lastname\n FROM (((((((((dataset d\n LEFT JOIN experiment e ON ((d.experiment_id = e.experiment_id)))\n LEFT JOIN project p ON ((p.project_id = e.project_id)))\n LEFT JOIN contact pi ON ((pi.contact_id = p.pi_contact)))\n LEFT JOIN analysis a ON ((a.analysis_id = d.callinganalysis_id)))\n LEFT JOIN contact c1 ON ((c1.contact_id = d.created_by)))\n LEFT JOIN contact c2 ON ((c2.contact_id = d.modified_by)))\n LEFT JOIN cv cv1 ON ((cv1.cv_id = d.status)))\n LEFT JOIN cv cv2 ON ((cv2.cv_id = d.type_id)))\n LEFT JOIN job j ON ((j.job_id = d.job_id)));

Query

SELECT d.dataset_id,\n d.name AS dataset_name,\n d.experiment_id,\n e.name AS experiment_name,\n d.callinganalysis_id,\n a.name AS callingnalysis_name,\n d.analyses,\n d.data_table,\n d.data_file,\n d.quality_table,\n d.quality_file,\n d.scores,\n c1.username AS created_by_username,\n d.created_date,\n c2.username AS modified_by_username,\n d.modified_date,\n cv1.term AS status_name,\n cv2.term AS type_name,\n j.name AS job_name,\n p.project_id,\n p.name AS project_name,\n pi.contact_id AS pi_id,\n pi.firstname AS pi_firstname,\n pi.lastname AS pi_lastname\n FROM (((((((((dataset d\n LEFT JOIN experiment e ON ((d.experiment_id = e.experiment_id)))\n LEFT JOIN project p ON ((p.project_id = e.project_id)))\n LEFT JOIN contact pi ON ((pi.contact_id = p.pi_contact)))\n LEFT JOIN analysis a ON ((a.analysis_id = d.callinganalysis_id)))\n LEFT JOIN contact c1 ON ((c1.contact_id = d.created_by)))\n LEFT JOIN contact c2 ON ((c2.contact_id = d.modified_by)))\n LEFT JOIN cv cv1 ON ((cv1.cv_id = d.status)))\n LEFT JOIN cv cv2 ON ((cv2.cv_id = d.type_id)))\n LEFT JOIN job j ON ((j.job_id = d.job_id)));

View v_marker_group_summary

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Query
SELECT mg.marker_group_id,\n mg.name AS marker_group_name,\n mg.germplasm_group,\n m.name AS marker_name,\n p.name AS platform,\n array_to_string(ARRAY( SELECT jsonb_array_elements_text(mg.value) AS jsonb_array_elements_text), ','::text, '?'::text) AS favorable_alleles\n FROM marker m,\n platform p,\n ( SELECT marker_group.marker_group_id,\n marker_group.name,\n marker_group.germplasm_group,\n (jsonb_each(marker_group.markers)).key AS key,\n (jsonb_each(marker_group.markers)).value AS value\n FROM marker_group) mg\n WHERE ((m.marker_id = (mg.key)::integer) AND (p.platform_id = m.platform_id));

Query

SELECT mg.marker_group_id,\n mg.name AS marker_group_name,\n mg.germplasm_group,\n m.name AS marker_name,\n p.name AS platform,\n array_to_string(ARRAY( SELECT jsonb_array_elements_text(mg.value) AS jsonb_array_elements_text), ','::text, '?'::text) AS favorable_alleles\n FROM marker m,\n platform p,\n ( SELECT marker_group.marker_group_id,\n marker_group.name,\n marker_group.germplasm_group,\n (jsonb_each(marker_group.markers)).key AS key,\n (jsonb_each(marker_group.markers)).value AS value\n FROM marker_group) mg\n WHERE ((m.marker_id = (mg.key)::integer) AND (p.platform_id = m.platform_id));

View v_marker_summary

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Query
SELECT m.marker_id,\n m.platform_id,\n p.name AS platform_name,\n m.variant_id,\n m.name AS marker_name,\n m.code,\n m.ref,\n m.alts,\n m.sequence,\n m.reference_id,\n r.name AS reference_name,\n m.primers,\n m.strand_id,\n cv.term AS strand_name,\n m.status,\n m.probsets,\n m.dataset_marker_idx,\n m.props,\n m.dataset_vendor_protocol\n FROM (((marker m\n LEFT JOIN platform p ON ((m.platform_id = p.platform_id)))\n LEFT JOIN reference r ON ((m.reference_id = r.reference_id)))\n LEFT JOIN cv ON ((m.strand_id = cv.cv_id)));

Query

SELECT m.marker_id,\n m.platform_id,\n p.name AS platform_name,\n m.variant_id,\n m.name AS marker_name,\n m.code,\n m.ref,\n m.alts,\n m.sequence,\n m.reference_id,\n r.name AS reference_name,\n m.primers,\n m.strand_id,\n cv.term AS strand_name,\n m.status,\n m.probsets,\n m.dataset_marker_idx,\n m.props,\n m.dataset_vendor_protocol\n FROM (((marker m\n LEFT JOIN platform p ON ((m.platform_id = p.platform_id)))\n LEFT JOIN reference r ON ((m.reference_id = r.reference_id)))\n LEFT JOIN cv ON ((m.strand_id = cv.cv_id)));

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