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Release date -  

GDM Loader download - Rel1.4_LoaderUI


 Software QA Test Cases

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    • New Features

    • Extract by Datasets Enhancement

      • A grid with columns which is sortable in asc or desc order - sorting can be done for any and all headers
        • dataset name, date loaded (initial sort is desc - most recent first), PI, Project, Experiment
      • The grid initially displays all extract ready datasets in the system
      • Filters are be used in a hierarchical manner to filter information in the grid: PI > Project > Experiment
      • Status defaults to Matrix Loaded, which will display only datasets with data that has been previously loaded.
      • Status can be changed to "All" to display all datasets with or w/o data
      • Details box: on click of a dataset, detailed information of the dataset will be displayed
        • fields include: PI,Curator - the user that loaded the dataset/submitted the job, date loaded, Project, Total of markers in the dataset, Total of dnarun in the dataset, Experiment, Platform, Protocol, Calling Analysis, List of applied analyses
      • A dataset can be added to the extraction criteria by checking a box (confirm w/Phil) and clicking an add button
      • Multiple datasets can be checked and added to the extraction criteria
      • Upon Submission of an extract, behavior is the same as rel 1.3

    • Marker Group summary File

      • Upon extracting by marker groups, user shall have a marker group summary file listing the following:

        • Marker_group_name
        • Germplasm_group
        • Marker_name
        • Platform
        • Fav_alleles

    • New ICRISAT Crops

      • Added the following new crops to ICRISAT's GDM instances (test and production)
        • Pigeon Pea
        • Pearl Millet
        • Groundnut
        • Fingermillet
      • Seed data for contacts are PI and Curator roles
      • All other seed data is the same as all other ICRISAT crops.

    • Webservice file transfer

      • Replaced SCP file transfer with webservice
      • File size checked before transferring file from local machine.
      • For files more than set limit, the user is asked to upload the file to the server directly.
      • File size limit is configurable by sysadmin, 10mb default


    Bug Fixes

    • GSD-280 Updating SSR data is wrong
    • GSD-341 'position.file' file exists on extracts
    • GSD-344 Extractor: marker list file name does not reflect correct date/timestamp after first extract
    • GSD-364 "dev" showing instead of crop name in 1.2 GOBII Data Importer
    • GSD-388 Not able to visualize the Marker Information table in the Marker Wizard (mainly in WHEAT)
    • GSD-391 If VCF alt field is '.' Strange error occurs.
    • GSD-393 Extractor: Multiple dataset information in SUCCESS emails rather than for single dataset
    • GSD-399 Getting extra column of text when extracting loaded .vcf files in hapmap format
    • GSD-415 Large chunks of missing data and errors in much of the data when exporting by sample to FJ from a large dataset
    • GSD-424 Flapjack not displaying extract error
    • GSD-435 LoaderUI: several datasets (under different Exp/platforms) loaded via Dataset Wizard, using one file to load the markers, samples, and matrix, does not associate the dataset(s) to the correct platform
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