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Driver

Approver

Contributors

Stakeholder

Yaw Nti-Addae

Victor Ulat

Pedro MEDEIROS BARBOSA

Liz Jones

Kelly Robbins

Tom Hagen

Stephan Einarson

Moira Sheehan

Lukas Muller

Objective

Develop an analytics framework that will allow breeders to analyze and summaries their phenotypic and genotypic data

Due date

Key outcomes

Status

NOT STARTED

Problem Statement

Scope

Must have:

  • User interface through which an analysis request can be submitted

  • Analysis pipeline for processing data

  • Jobs tracking

  • Analysis and Models:

    • Phenotypic analysis

      • ANOVA

      • Simple mixed model (without genotypic information)

      • Simple model

    • Experiment design

  • Integration with breeding management system

Nice to have:

Not in scope:

  • Input file processing

  • file output summary reports

  • Genotypic analysis

  • Covariance matrices (GRM)

  • Integration with genotype management system

Timeline

Apr2020MayJunJulAugSepOctNovDecJan2021FebMarAprReview 1Review 2Review 3Review 4UATReview 5Release
Authentication
Database
Process
Stat Model
BrAPI
UI
DevOps

IAM

Federation

Roles

User config

Jobs DM

Report DM

Analysis DM

Model DM

Pipeline

RabbitMQ

Job submission

ASReml prep

R prep

Calc Engine

Report Engine

UAT

ASReml models

Test models

Test models

R - Exp Design

R Simple model

Analysis statistics

Report summaries

API Framework

User config

Analysis

Models

Request analysis

Job status

Report

Angular setup

Authentication

User config

Phenotypic analysis view

Pheno data

Request form

Job status

Report view

UAT

IAM & DM

API & UI

Dev deploy

Automated test framework

Test deploy

Prod deploy

Milestones and deadlines

Milestone

Owner

Deadline

Status

NOT STARTED

Reference materials


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