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GDM Loader download - GDI-Test
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New Features
LoaderUI Job Validation
- Marker Wizard Mapping Validation
- Mapping Marker table: Required Fields must have values: marker_name
- A Platform must be selected
- in order to map Marker_prop Table, Marker table must be mapped
- Mapping Linkage_Group table: Required Fields must have values: Linkage_Group_name
- A Mapset must be selected
- Mapping Marker_Linkage_Group table: Required Fields must have values: Linkage_Group_name, Marker_Name
- If Marker table is mapped, then Marker "name" must be equal to Marker_Linkage_Group "marker_name"
- If Linkage_Group is mapped, then Linkage_Group "name" must be equal to Marker_Linkage_Group "linkage_group_name"
- DNA Sample Wizard Mapping Validation
- Mapping Germplasm Table: Required Fields must have values: germplasm_name, germplasm_external_code
- in order to map Gerplasm_prop Table, Germplasm table must be mapped
- Mapping Dnasample table: a Project must be selected, Required Fields must have values: dnasample_name, external_code, dnasample_num
- If Germplasm table is mapped, then Germplasm "external_code" must be equal to Dnasample "external_code"
- in order to map Dnasample_prop Table, Dnasample table must be mapped
- Mapping Dnarun table: Required Fields must have values: dnarun_name
- An Experiment must be selected
- If Dnarun "dnasample_name" is mapped, then Dnarun "dnasample_name" must be equal to Dnasample "name
- If Dnarun "num" is mapped, then Dnarun "num" must be equal to Dnasample "num"
- in order to map Dnarun_prop Table, Dnarun table must be mapped
- Dataset Wizard Mapping Validation
- Similar validations as Marker and DNA Sample Wizards as listed above
- Marker Wizard Mapping Validation
Integrate DART QC With GOBII
- KDCompute, dockerized version, deployed & integrated along with the given GOBII environment.
- When the site does not support QC Analysis, the qc checkbox is disabled.
- Web service support for the Loader UI to determine whether or not a particular site supports QC integration.
- When an error occurs during QC processing, the internal error report should be attached to the email so that it can be forwarded to support.
- Total run time of QC job is reported in summary email.
- QC analysis output files will be stored in a separate QC folder.
- Dataset.hmp.txt
- dataset_summary.csv
- dev_DS-2.log
- F1.csv
- marker.file
- Report.xlsx
- Reproducibility.csv
- Reproducibility_By_germplasm_n
- sample.file
- Similarity_matrix.csv
- Similarity_matrix_columnwise.c
- Similarity_matrix_with_meta.cs
- stderr.txt
- stdout.txt
- summary.file
- Summary_markers.csv
- Summary_samples.csv
- Summary_samples_averages.csv
- Summary_samples_chisq.csv
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