Mapping Marker table: Required Fields must have values: marker_name
A Platform must be selected
in order to map Marker_prop Table, Marker table must be mapped
Mapping Linkage_Group table: Required Fields must have values: Linkage_Group_name
A Mapset must be selected
Mapping Marker_Linkage_Group table: Required Fields must have values: Linkage_Group_name, Marker_Name
If Marker table is mapped, then Marker "name" must be equal to Marker_Linkage_Group "marker_name"
If Linkage_Group is mapped, then Linkage_Group "name" must be equal to Marker_Linkage_Group "linkage_group_name"
DNA Sample Wizard Mapping Validation
Mapping Germplasm Table: Required Fields must have values: germplasm_name, germplasm_external_code
in order to map Gerplasm_prop Table, Germplasm table must be mapped
Mapping Dnasample table: a Project must be selected, Required Fields must have values: dnasample_name, external_code, dnasample_num
If Germplasm table is mapped, then Germplasm "external_code" must be equal to Dnasample "external_code"
in order to map Dnasample_prop Table, Dnasample table must be mapped
Mapping Dnarun table: Required Fields must have values: dnarun_name
An Experiment must be selected
If Dnarun "dnasample_name" is mapped, then Dnarun "dnasample_name" must be equal to Dnasample "name
If Dnarun "num" is mapped, then Dnarun "num" must be equal to Dnasample "num"
in order to map Dnarun_prop Table, Dnarun table must be mapped
Dataset Wizard Mapping Validation
Similar validations as Marker and DNA Sample Wizards as listed above
Integrate DART QC With GOBII
KDCompute, dockerized version, deployed & integrated along with the given GOBII environment.
When the site does not support QC Analysis, the qc checkbox is disabled.
Web service support for the Loader UI to determine whether or not a particular site supports QC integration.
When an error occurs during QC processing, the internal error report should be attached to the email so that it can be forwarded to support.
Total run time of QC job is reported in summary email.
QC analysis output files will be stored in a separate QC folder.
Dataset.hmp.txt
dataset_summary.csv
dev_DS-2.log
F1.csv
marker.file
Report.xlsx
Reproducibility.csv
Reproducibility_By_germplasm_n
sample.file
Similarity_matrix.csv
Similarity_matrix_columnwise.c
Similarity_matrix_with_meta.cs
stderr.txt
stdout.txt
summary.file
Summary_markers.csv
Summary_samples.csv
Summary_samples_averages.csv
Summary_samples_chisq.csv
Bug Fixes
Error with Flapjack export by marker (from large dataset) - missing data and incorrect data
Extract of IUPAC data in flapjack orientation causes weird duplication
Cannot load a dataSet with markers at the top and dnarun_names on the left Fixed issue with data loads specifying marker as 'top' in Dataset wizard due to file transposition code not completing before next step began.
