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changes.mady.by.user Yaw Nti-Addae

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changes.mady.by.user Yaw Nti-Addae

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Key

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Objective

Develop an analytics framework that will allow breeders to analyze and summaries their phenotypic and genotypic data

Due date

Key outcomes

Status

Status
titleNOT STARTED

Problem Statement

Scope

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titleMust have

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  • User interface through which an analysis request can be submitted

  • Analysis pipeline for processing data

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  • Job tracking

  • Analysis and Models:

    • Phenotypic analysis

      • ANOVA

      • Simple mixed model (without genotypic information)

      • Simple model

    • Experiment design

  • Integration with breeding management system

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titleNice to have

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titleNot in scope

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  • Input file processing

  • file output summary reports

  • Genotypic analysis

  • Covariance matrices (GRM)

  • Integration with genotype management system

Timeline

Roadmap Planner
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titleRoadmap%20Planner
hash99db96ab148b6cd09636af75811d7f1a

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Milestones and deadlines

Milestone

OwnerDeliverables

Deadline

Status

Review 1

  • Install and configure IAM, including connections to Cornell University OAuth, Google authenticator, and Active Directory

  • Develop and deploy data models for user configuration and job tracking

Status
titleNOT STARTED

Review 2

  • Role management

  • Analysis and Model data models

  • Message queuing

  • Experiment design statistics

  • Anova model statistics

  • Simple model statistics

Status
titlenot started

Review 3

  • UI - Analysis request form

  • Report data model

Status
titlenot started

Review 4

  • Report view

  • Job status

Status
titlenot started

UAT

  • User acceptance testing

Status
titlenot started

Review 5

  • Project review and lessons learned

Status
titlenot started

v1 Release

  • Production release and integration with EBS

Status
titlenot started

Technologies

Layer

Technologies

Notes

Code repository

  • Github

Authentication

  • WSO2 vs Keycloak

Database

  • PostgreSQL

Data processing

  • RabbitMQ

  • Java vs Python

Statistics

  • ASReml 4

  • R

API

  • BrAPI standards

  • WSO2 vs Java

User interface

  • Angular

DevOps

  • Jenkins

Testing

  • Selinium

  • Junit

Reference materials