2021-01-12 GDM Standalone Weekly Meeting notes

Date

Jan 12, 2021

Participants

  • @Joel Byrnes

  • @Yaw Nti-Addae

  • @Elizabeth Jones

  • @Vishnu Govindaraj

  • @Angel Manica Raquel

Goals

  • Assess current state of projects

  • Reviewing Genotype data loading process (@Vishnu Govindaraj)

Discussion topics

Item

Presenter

Notes

Item

Presenter

Notes

Loader UI

Joel

  • only one item since last time about ready to reivew

  • sprint in process of starting


Data loading

Vishnu

  • text file loader template examples

    • header line number or header name

      • line number would override

  • users will need to define the format of file (hapmap, vcf, etc)

  • users will need to define the type of file (iupac, 2LN, codom, dom, etc)

CAST

Angel

  • better error messages

    • 0 samples

    • consensus: no replicate samples

  • split summary can be displayed even if consensus calling fails

Action items

check out Edit Dataset.. seems to throw error about analysisId @Joel Byrnes
datasetStatesByParentCount empty? @Vishnu Govindaraj

Decisions

  1. not being able to load germplasm data along w/ sample data is OK