Objective
Objective is to be able to load marker information through web services using defined templates
Marker information template
Name | Table | Field |
|---|---|---|
marker.name | marker | name |
marker.ref | ref | |
marker.alts | alt | |
marker.sequence | ||
marker.strand_name | ||
marker.props.{property_name} | props | |
linkage_group.name | linkage_group | name |
linkage_group.start | start | |
linkage_group.stop | stop | |
marker_linkage_group.linkage_group_name | marker_linkage_group | linkage_group_id |
marker_linkage_group.marker_name | marker_id | |
marker_linkage_group.start | start | |
marker_linkage_group.stop | stop | |
marker_groups.name | marker_groups | name |
marker_groups.germplasm_group | marker_groups | germplasm_group |
marker_groups.favorable_alleles | marker_groups | fav_alleles |
DNA information template
Name | Table | Field | Notes |
|---|---|---|---|
germplasm.name | germplasm | name | |
germplasm.external_code | external_code | ||
germplasm.species_name | species_name | ||
germplasm.type | type | ||
germplasm.props{property_name} | props | ||
dnasample.name | dnasample | name | |
dnasample.platename | platename | ||
dnasample.num | num | ||
dnasample.well_col | well_col | ||
dnasample.well_row | well_row | ||
dnasample.uuid | uuid | ||
dnarun.props.{property_name} | props | ||
dnarun.name | dnarun | name | |
Notes:
Dont allow unknown CV terms
Will only load data specified in template, any other fields in data will be ignored
Should be able to create project and experiments on the fly and load data to them
Data sources:
local system through file browse
server path to which GDM containers have access
URL to download data