Objective
This is a web app to extract data from GDM, pre-process it, and generate a Flapjack project file that will be used in a Flapjack application for pedigree verification.
0. Provide BrAPI links for GDM (UI has a dropdown to choose a Study)
1. Get data from GDM
2. Provide a preview of that data + infor on Study
need 2 tasks for Vishnu -
- include a property respnse for dnarun whcih should have all the germplasm and dnasample metadata and their properties associated with the list of dnaruns provided
- include a property respnse field for variants which should have all the marker metadata and their properties
3. Filter data
4. Consensus
5. Preview
6. Split Data
7. Export FJ Project file
Success metrics
| Goal | Metric |
|---|---|
| web page that connects to GDM through BrAPI | |
| Allow users to extract studies (experiment + dataset) | |
| Filter dataset by call rates | |
| perform consensus calling | |
| split dataset into populations based on a selected criteria | |
| generate and download Flapjack project file |
Requirements
| # | Requirement | User Story | Importance | Jira Issue | Notes |
|---|---|---|---|---|---|
| 1 | HIGH | ||||
| 2 |
User interaction and design
Open Questions
| Question | Answer | Date Answered |
|---|---|---|