A grid with columns which is sortable in asc or desc order - sorting can be done for any and all headers
dataset name, date loaded (initial sort is desc - most recent first), PI, Project, Experiment
The grid initially displays all extract ready datasets in the system
Filters are be used in a hierarchical manner to filter information in the grid: PI > Project > Experiment
Status defaults to Matrix Loaded, which will display only datasets with data that has been previously loaded.
Status can be changed to "All" to display all datasets with or w/o data
Details box: on click of a dataset, detailed information of the dataset will be displayed
fields include: PI,Curator - the user that loaded the dataset/submitted the job, date loaded, Project, Total of markers in the dataset, Total of dnarun in the dataset, Experiment, Platform, Protocol, Calling Analysis, List of applied analyses
A dataset can be added to the extraction criteria by checking a box (confirm w/Phil) and clicking an add button
Multiple datasets can be checked and added to the extraction criteria
Upon Submission of an extract, behavior is the same as rel 1.3
Marker Group summary File
Upon extracting by marker groups, user shall have a marker group summary file listing the following:
Marker_group_name
Germplasm_group
Marker_name
Platform
Fav_alleles
New ICRISAT Crops
Added the following new crops to ICRISAT's GDM instances (test and production)
Pigeon Pea
Pearl Millet
Groundnut
Fingermillet
Seed data for contacts are PI and Curator roles
All other seed data is the same as all other ICRISAT crops.
Webservice file transfer
Replaced SCP file transfer with webservice
File size checked before transferring file from local machine.
For files more than set limit, the user is asked to upload the file to the server directly.
File size limit is configurable by sysadmin, 10mb default
Bug Fixes
GSD-280 Updating SSR data is wrong
GSD-341 'position.file' file exists on extracts
GSD-344 Extractor: marker list file name does not reflect correct date/timestamp after first extract
GSD-364 "dev" showing instead of crop name in 1.2 GOBII Data Importer
GSD-388 Not able to visualize the Marker Information table in the Marker Wizard (mainly in WHEAT)
GSD-391 If VCF alt field is '.' Strange error occurs.
GSD-393 Extractor: Multiple dataset information in SUCCESS emails rather than for single dataset
GSD-399 Getting extra column of text when extracting loaded .vcf files in hapmap format
GSD-415 Large chunks of missing data and errors in much of the data when exporting by sample to FJ from a large dataset
GSD-424 Flapjack not displaying extract error
GSD-435 LoaderUI: several datasets (under different Exp/platforms) loaded via Dataset Wizard, using one file to load the markers, samples, and matrix, does not associate the dataset(s) to the correct platform
