Genotyping data management systems
System | Group/Institution | Contact |
|---|---|---|
Germinate | JHI | Sebastian |
MontyDB | Cornell | Francisco |
GDM | Cornell | Joel |
Breedbase | BTI | Ask Tetima |
Gigwa | CIRAD | Guilhem |
PHG | Cornell | Ask Ed |
BCF | Broad Institute | |
GDR-BIMS (https://github.com/laceysanderson ) | Un. of Washington | Dori? |
Patrick |
VM allocations
VM Hostname | Status | Server Pool | Assignment |
|---|---|---|---|
OFF | cbsugobii09 | Germinate | |
ON | cbsugobii09 | GDM | |
ON | cbsugobii10 | Gigwa | |
OFF | cbsugobii10 | MontyDB | |
ON | cbsugobii11 | Breedbase | |
OFF | cbsugobii11 | PHG |
Each VM has the following resources:
8 CPUs
64 GB RAM
2 TB SSD
/storage mounted volumn
/shared_data mounted volumn
Users
Username | User |
|---|---|
gadm | system |
yaw | |
dave | |
francisco |
Datasets
Dataset | Format | Location |
|---|---|---|
Maize NAM | CSV | /shared_data/test_data/NAM_HM32/csv |
Simulated datasets | ||
polyploid data in VCF | ||
indel data | ||
rice high density array | ||
African rice |
Actions:
- presentations on polyploid data
- user accounts for participants
- identify benchmarking criteria