Tetraploid Dataset Type

Objective

Provide the ability for a user to upload a dataset type of 'nucleotide_4_letter' as per other data types.

User Story

As a GDM user, I want to be able to load a new dataset type,  'nucleotide_4_letter'

• new dataset type of 'nucleotide_4_letter'
  • available in the LoaderUI Drop down on the 'Create' dataset page
  • dataset type of 'nucleotide_4_letter'
  • added to the cv table with cvgroup_id = 1
• Contains either 0 or 1 separator character between each element
  • allowed separators are:
    • ,
    • |
    • /
    • no separator
• allowed values/alleles are
  • /
  • A
  • C
  • G
  • T
  • N
  • +
  • -
  • anything in the missingIndicators.txt file found at: 
    • http://gobiin1.bti.cornell.edu:6083/projects/GM/repos/gobiiscripts/browse/loaders/etc/missingIndicators.txt
• New type transformation in Digest/Extract

Success metrics

Assumptions

Requirements

User interaction and design

Open Questions

Out of Scope