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Develop a web app to extract data from GDM, preprocess it, and generate a Flapjack project file that will be used in a Flapjack application for pedigree verification.
User Story
As a GDM user, I want to be able to split datasets into populations based on selected criteria
- User will be presented with a list of sample meta column names they can use for splitting
- There will be a selection box where the user can select one or more options
- There is a set list in the leftmost list box
- The user can select one or more items in the leftmost list and push to the rightmost list
- Once items have been moved to the rightmost list the user can select and move an item back to the leftmost list
- The list selected and in the rightmost list box can be reordered
- The order of the list will be used to split the data
- The list contains the following options for splitting:
- dnasample_sample_group
- dnasample_sample_group_cycle
- germplasm_par1
- germpalsm_par2
- germplasm_pedigree
- germplasm_type
Success metrics
| Goal | Metric |
|---|
| web page that connects to GDM through BrAPI | |
| Allow users to extract studies (experiment + dataset) |
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| Filter dataset by call rates |
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| perform consensus calling |
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| split dataset into populations based on a selected criteria |
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| generate and download Flapjack project file |
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Requirements
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| columns | key,summary,type,assignee,priority,status,issuelinks |
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| maximumIssues | 20 |
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| jqlQuery | "Epic Link" = GDM-461 |
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| serverId | 3ed8d091-172c-31ee-8b1a-f688a0e72656 |
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User interaction and design
Mockup: https://www.justinmind.com/usernote/prototypes/21965828/41833171/42838863/index.html#/screens/d12245cc-1680-458d-89dd-4f0d7fb22724
Open Questions
| Question | Answer | Date Answered |
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