| Page Properties | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
...
- new dataset type of 'nucleotide_4_letter'
- available in the LoaderUI dropdown list on the 'Create' dataset page
- dataset type of 'nucleotide_4_letter'
- added to the cv table with cvgroup_id = 1
Jira Legacy showSummary false server System JIRA serverId 3ed8d091-172c-31ee-8b1a-f688a0e72656 key GDM-445
- Contains exactly 4 elements
- either 0 or 1 separator character between each element
- allowed separators are:
- ,
- |
- /
- no separator
- allowed separators are:
- allowed values/alleles are
- A
- C
- G
- T
- N
- +
- -
- anything in the missingIndicators.txt file
- add ? to the above file
- anything in this file that appears in the nucleotide_4_letter matrix file, replace whole 'segment' with an N, not just one elementif a SNP = missing indicator, replace with NNNN
- if an allele = missing indicator, fail
- locationt: http://gobiin1.bti.cornell.edu:6083/projects/GM/repos/gobiiscripts/browse/loaders/etc/missingIndicators.txt
- either 0 or 1 separator character between each element
- New type transformation in Digest/Extract similar to 'nucleotide_2_letter'.
...
Success metrics
| Goal | Metric |
|---|---|
Assumptions
...
Issues in Epic
| Jira Legacy | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
|
...