Page Comparison

Objective

Provide the ability for a user to upload a dataset type of 'nucleotide_4_letter' as per other data types, similar to 'nucleotide_2_letter'.

User Story

As a GDM user, I want to be able to load a new dataset type,  'nucleotide_4_letter'

Requirements

...

...

• new dataset type
from which to choose
• of 'nucleotide_4_letter'
  • available in the LoaderUI
Drop down
• • dropdown list on the 'Create' dataset page
  • dataset type of 'nucleotide_4_letter'
  • added to the cv table with cvgroup_id = 1

    Jira Legacy
    showSummary false server System JIRA serverId 3ed8d091-172c-31ee-8b1a-f688a0e72656 key GDM-445

• Contains exactly 4 elements
  • either 0 or 1 separator character between each element
    • allowed separators are:
      • ,
      • |
      • /
      • no separator
  • allowed values/alleles are
  • /
  • • • A
      • C
      • G
      • T
      • N
      • +
      • -
    • anything in the missingIndicators.txt file
  found at: /storage/app_data/gobii_bundle
  • • • add ? to the above file
      • if a SNP = missing indicator, replace with NNNN
      • if an allele = missing indicator, fail
      • locationt: http://gobiin1.bti.cornell.edu:6083/projects/GM/repos/gobiiscripts/browse/loaders/etc

  Success metrics

  ...

  Assumptions

  Milestones

  ...

  • • • /missingIndicators.txt
  • New type transformation in Digest/Extract similar to 'nucleotide_2_letter'.

  Acceptance Criteria:

  • querying the database: select * from cv where cvgroup_id = 1; results in  'nucleotide_4_letter'  in the cv table
  • 'nucleotide_4_letter' is selectable in the LoaderUI dropdown list on the 'Create' dataset page
  • I can successfully load a matrix with the allowed alleles and separators as described above
  • any attempted load with alleles other than listed above will fail
  • any attempted load with separators other than those listed above will fail
  • ? has been added to the missingIndicators.txt file

  Success metrics

  Goal	Metric

  Assumptions

  Issues in Epic

  Jira Legacy
  server System JIRA columns key,summary,type,assignee,priority,status,issuelinks maximumIssues 20 jqlQuery "Epic Link" = GDM-444 serverId 3ed8d091-172c-31ee-8b1a-f688a0e72656

  User interaction and design

  Open Questions

  Question	Answer	Date Answered

  Out of Scope