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  1. Prepare phenotype input files: 1. Prepare Phenotype Files

  2. Prepare genotype input files: 2. Prepare Genotype Files

  3. Log in Galaxy user interface

  4. Import phenotype input files 

  5. Import genotype input files

  6. Perform genotype data format encoding

  7. Cross-reference check sample names and order in phenotype and genotype files: 3. Sample Matching

  8. Select and define training datasets and parameters: 

  9. Define test datasets and parameters

  10. Specify prediction models and parameters: 4. GEBV Calculators

  11. Excute and run prediction analysis

  12. Export prediction results

  13. Visualize input and output results on visualization software

  14. Make selection

 

The address of the CBSU/GOBII dockerized Galaxy is  Galaxy demo server:  http://galaxy-demo.excellenceinbreeding.org/

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