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The Consensus And Splitting Tool will allow you to select a dataset from GOBii, apply some basic filtering, carry out consensus calling of replicate samples, split the file by sample metadata, and create a project file for analysis in Flapjack. Details of these steps are provided below. Note: currently the pipeline is for 2 letter nucleotide datatypes only.
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First, select the url for environment that you would like to pull data from. The environment will look something like http:\\api.gobii.org:8081\gobii-dev\
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