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Invited speakers 

  • Marcelo Mollinari, Quantitative Geneticist, NCSU, sweetpotato MAPpoly
  • Lindsay Clark, Geneticist, UI, developed polyRAD, ploidyverse
  • Antonio Augusto Franco Garcia, Geneticist and Plant Breeder, USR, Brazil, sugarcane
  • Jeffrey Endelman, UW, leads the potato variety development program, specialist in GS, GWAS
  • Umesh Rosyara, CIMMYT, previously worked on Strawberry and Sour Cherry,  developed GWASpoly

...

TimeTopicSpeaker
9.00 am

Improving breeding through data management and analysis tools - GOBii and Excellence in Breeding module 5.

Open seminar.

Liz Jones
9.30 am

The Carpentries: https://swc-uiuc.github.io/2019-05-10-cip/ https://carpentries.org/

A workshop directed at R novices, covering how to import data, manipulate a data frame, and make some plots.

Open to CIP community.

Lindsay Clark

Umesh Rosyara

9.30 amIn parallel to The Carpentries, this morning is also reserved for developing proposals, defining collaborations, and small group consultations
12.00pmLunch
1.00 pm

Genotyping and variant calling - expanded session

  • GATK - Trushar
  • Variant discovery with no reference available - Lindsay
  • vcf filtering tools - Lindsay
  • Calling pipelines (ClusterCall, FitTetra, SuerMASSA, updog, polyRAD, ... ) - Marcelo
Marcelo Mollinari
4 pmTour of CIP potato and sweet potato Genebank tour (45 mins)Dorcus Gemenet

...