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Invited speakers 

  • Marcelo Mollinari, Quantitative Geneticist, NCSU, sweetpotato MAPpoly
  • Lindsay Clark, Geneticist, UI, developed polyRAD, ploidyverse
  • Antonio Augusto Franco Garcia, Geneticist and Plant Breeder, USR, Brazil, sugarcane
  • Jeffrey Endelman, UW, leads the potato variety development program, specialist in GS, GWAS
  • Umesh Rosyara, CIMMYT, previously worked on Strawberry and Sour Cherry,  developed GWASpoly

...

  • Hannele Lindqvist-Kreuze, CIP: Potato (local)
  • Dorcus Gemenet, CIP: Sweetpotato
  • Trushar SharShah, IITA: Banana
  • Catherine Breton, Bioversity: Banana
  • Ranjana Bhattacharjee, IITA: Yam
  • Agre Paterne, IITA: Yam
  • Luis Augusto, CIAT: Forages/Cassava
    Abhishek Rathore: representing ICRISAT, GOBii and EiB module 5

...

TimeTopicSpeaker
9.00 amWelcomeHugo Campos
9.20 am

Introductions and logistics

Liz and Dorcus

Overview of CGIAR polyploid crops - genotyping methods, analysis methods, data storage, challenges (10 mins each?)

Moderator, Liz Jones
9.30 amPotatoHannele Lindqvist Kreuze
9.40 amSweetpotatoDorcus Gemenet
9.50 amYamAgre Ranjana
10.00 amCIAT crops

Luis Augusto

10.10 amBanana, IITATrushar Shah
10.20 amBanana, BioversityCatherine
10.30 amBreak
11.00 am

Genotype quality in polyploids (30 mins)

Jeff Endelman
11.30 am

Variant and genotype calling issues. How various tools address this.

Genotype calling with PolyRAD (30 mins)

Lindsay Clark
12.00 amHaplotyping and imputationMarcelo Mollinari or Umesh?in populationsUmesh Rosyara
12.30 pm

Building highly dense multilocus, multidose markers in polyploids (30 mins)

Marcelo Mollinari
1 -2 pmLunch
2.00 pmPresentations to help lead break-out groups
2.00 pmFile formats - ploidyverse Lindsay Clark
2.10 pmData storage - GOBiiLiz Jones
2.20 pmGenotyping technology methods and needs - need to be specific about goals here - technology or analysisJeff / Luis
2.30 pm

Breakout sessions and coffee

1) Genotyping technology needs - Jeff

(2) Data formats and storage - Liz

(3) Data formats and ontology for markers -Lindsay


4.30 pmReport back and discussion
5 pmWrap up

...