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Module / Application | Owner | Description | Latest Version | Status [Deployed To] | Packaging | Notes |
|---|---|---|---|---|---|---|
Data Warehouse (PostgreSQL) | KevinPalis Kevin Palis | The main data warehouse as modeled here: Entity Relationship Diagram This also includes the Data Access Layer. For more info, see the main documentation space here: https://gobiiproject.atlassian.net/wiki/spaces/GDW | 2.2 | Done and awaiting deployment [CIMMYT, IRRI, ICRISAT] | database container | This module is actively being developed an improved. It ships with the entire GDM stack and so versioning is the same. |
HDF5 Storage for Genotype | Dave Matthews | The main storage of the genotype matrix. This includes some C libraries written for the creation and extraction of HDF5 files for GOBii. We have yet to update its documentation in our Confluence cloud account. | 2.2 | Done and awaiting deployment [CIMMYT, IRRI, ICRISAT] | database container | This module is actively being developed an improved. It ships with the entire GDM stack and so versioning is the same. |
LoaderUI | Yaw Nti-Addae / Angel Raquel | Desktop application for mapping different input files to GOBii data entities and for creating loading jobs. More information is available here: https://gobiiproject.atlassian.net/wiki/spaces/GD/pages/32505916/Data%2BLoader | 2.2 | Done and awaiting deployment [CIMMYT, IRRI, ICRISAT] | dowloadable, executable JAR file | This is built on an SWT version that came with Eclipse back in 2016. It has its challenges. It also doesn’t ship with our docker containers and each user has to download it. The Web Loader UI that PFR is working on aims to replace this. |
ExtratorUI / Web Services | Vishnu | Web application for creating extraction jobs. More information is available here: https://gobiiproject.atlassian.net/wiki/spaces/GD/pages/32440526/Data%2BExtractor | 2.2 | Done and awaiting deployment [CIMMYT, IRRI, ICRISAT] | web container | This module ships with the web container. One ExtractorUI app = one crop, so in cases like ICRISAT having 6 crops, you will see 6 instances of this app. Also, the web services are packaged in the same WAR as the ExtractorUI. |
Timescope | Angel Raquel / Kevin Palis | Web application that can connect to any GDM backend to manage data. Currently, it covers datasets and markers searching and cleanup. You can find the main documentation space here: https://gobiiproject.atlassian.net/wiki/spaces/TD/overview | 2.2 | Done and awaiting deployment [CIMMYT, IRRI, ICRISAT] | web container (with plans of creating an independent container) | Currently, this application covers complex queries and cascading deletions of both dataset and marker entities (ie. R and D of CRUD). KevinPalis is proposing this to be a CRUD-complete software for the GDM backend and be packaged independent of the web container. This way we can spin it up anywhere as long as there’s a network route to GDM’s database port. |
KDCompute | DArT (Andrew Kowalczyk) | Web application for data analysis that is currently integrated with our loading process (a checkbox in the LoaderUI toggles it on or off for a particular job). More information on KDCompute is available here: http://www.kddart.org/kdcompute.html | 1.6.1 (server) 0.14.3 (plugin) | Deployed [CIMMYT, IRRI, ICRISAT] | kdcompute container | This ships in its own container and the last release version was from May of 2019. |