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Page Properties


Target release2.3
Epic
Jira Legacy
serverSystem JIRA
serverId3ed8d091-172c-31ee-8b1a-f688a0e72656
keyGDM-461
Document status
Status
titleDRAFT
Document owner
DesignerElizabeth Jones
Tech leadJohn Carlos Ignacio
Developer(s)

Angel Manica Raquel

John Carlos Ignacio

Vishnu Govindaraj

QADeb Weigand


Objective

This is Develop a web app to extract data from GDM, pre-process preprocess it, and generate a Flapjack project file that will be used in a Flapjack application for pedigree verification.0. Provide BrAPI links

Success metrics

GoalMetric
web page that connects to GDM through BrAPI
Allow users to extract studies (experiment + dataset)
Filter dataset by call rates
perform consensus calling
split dataset into populations based on a selected criteria
generate and download Flapjack project file

Requirements

#RequirementUser StoryImportanceJira IssueNotes
1PedVer: Web-based ApplicationAs a GDM user, I want a webpage that connects to GDM through BrAPI
Provide BrAPI links and login credentials for GDM (UI has a dropdown to choose a Study)

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Status
colourRed
titleHIGH


2PedVer: Extract StudiesAs a GDM user, I want to extract Studies (experiment + Dataset)
preview of the data + information on the Study
include a property response for dnarun which should have all the germplasm and dnasample metadata and their properties associated with the list of dnaruns provided

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include a property

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response field for variants which should have all the marker metadata and their properties


3

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Success metrics

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Requirements

2
#RequirementUser StoryImportanceJira IssueNotes
1
Status
colourRed
titleHIGH
PedVer: FilterAs a GDM user, I want to be able to filter data by call rates, either sample call rate or marker call rate


4PedVer: ConsensusAs a GDM user, I want to perform consensus calling


5PedVer: Split DataAs a GDM user, I want to be albe to split datasets into populations based on selected criteria


6PedVer: Extract FJ Project FileAs a GDM user, I want to generate and download a flapjack project file


User interaction and design

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