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- new dataset type of 'nucleotide_4_letter'
- available in the LoaderUI Drop down dropdown list on the 'Create' dataset page
- dataset type of 'nucleotide_4_letter'
- added to the cv table with cvgroup_id = 1
- Contains exactly 4 elements
- either 0 or 1 separator character between each element
- allowed separators are:
- ,
- |
- /
- no separator
- allowed separators are:
- allowed values/alleles are
- A
- C
- G
- T
- N
- +
- -
- anything in the missingIndicators.txt file
- add ? to the above file
- anything in this file that appears in the nucleotide_4_letter matrix file, replace whole 'segment' with an N, not just one element
- found at: http://gobiin1.bti.cornell.edu:6083/projects/GM/repos/gobiiscripts/browse/loaders/etc/missingIndicators.txt
- either 0 or 1 separator character between each element
- New type transformation in Digest/Extract similar to 'nucleotide_2_letter'.
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- querying the database: select * from cv where cvgroup_id = 1; results in 'nucleotide_4_letter' in the cv table
- 'nucleotide_4_letter' is selectable in the LoaderUI Drop down dropdown list on the 'Create' dataset page
- I can successfully load a matrix with the allowed alleles and separators as described above
- any attempted load with alleles other than listed above will fail
- any attempted load with separators other than those listed above will fail
- ? has been added to the missingIndicators.txt file
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