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Users will like to be able to extract meta information they have loaded to GDM, both system defined and custom ones.

The following properties are up for discussion on whether they should be extracted or not:

  • Project props
    Mapset props
    Platform props

In addition, there is a need for IDs to be extracted for various entities.

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  • For sample.file
    • Props (both system and user defined)
      • germplasm props
      • dnasample props
      • project props
    • IDs:
      • germplasm_id
      • dnasample_id
      • dnarun_id
  • For marker.file:
    • marker props (both system and user defined)
    • IDs:
      • marker_id
      • linkage_group_id
  • Headers for props fields in the files should be prefixed with the main entity table name. e.g. trial_name in dnasample props should have a header "dnasample_trial_name" in sample.file

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QuestionAnswerDate Answered

Should the following properties be extracted:

  • project props
  • mapset props
  • platform props
yes to project props 
What samples fields should be included in Hapmap file?

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